• Nov 2026 - New preprint on fast long-read RNA-seq mapping to a transcriptome!
• Sep 2026 - I successfully defended my PhD!
• Jun 2026 - My PhD thesis is now available online and as pdf version!
• Jun 2026 - Our paper on accelerated sequence filtering using minimizers has been published in Peer Community Journal!
• May 2026 - Talk at RECOMB 2026 on multiminimizers
• May 2026 - Talk at RECOMB-Arch 2026 on helicase
• Apr 2026 - Our paper on helicase, a vectorized parsing library for FASTA/Q, has been accepted to RECOMB-Arch 2026!
• Apr 2026 - New post on breaking ntHash!
• Feb 2026 - Talk at DSB 2026 on scalable indexing & mapping with consistent phrases
• Jan 2026 - I just released helicase, a vectorized parsing library for FASTA/Q that supports on-the-fly bitpacking!
• Jan 2026 - Our paper on multiminimizers has been accepted to RECOMB 2026!
• Nov 2025 - Talk at SeqBIM 2025 on scalable sequence comparison with consistent parsing
• Jul 2025 - Talk at SEA 2025 in Venice on simd-minimizers
• Jul 2025 - Flash talk at JOBIM 2025 on estimating pangenome openness using PFP
• Apr 2025 - Talk at RECOMB 2025 in Seoul on hyper-k-mers
• Apr 2025 - I visited Rob Patro's lab at the University of Maryland from February to April!
• Mar 2025 - Our paper on simd-minimizers, a SIMD-accelerated library to compute random minimizers, has been accepted to SEA 2025!
• Dec 2024 - Our paper on hyper-k-mers, a more efficient alternative to super-k-mers, has been accepted to RECOMB 2025!
• Jul 2024 - Talk at ISMB 2024 in Montreal on CBL, a dynamic index for k-mer sets
• Jun 2024 - New preprint on constrained enumeration of k-mers using CBL!
• Mar 2024 - Talk at DSB 2024 in Montpellier about CBL
• Mar 2024 - Our paper on CBL, a dynamic k-mer index based on necklaces, has been accepted to ISMB 2024!
• Dec 2023 - Talk at the seminar on Lyndon words (as part of the Lyndex project) at Univ Rouen about using necklaces to build a locality-preserving k-mer index
• Nov 2023 - Talk at the SeqBIM days in Lille about a dynamic and locality-preserving data structure for k-mer sets
• Nov 2023 - Talk at the RT MIA workshop on dimensionality reduction at ENS Lyon about locality-preserving representation of sparse k-mer sets
• Oct 2023 - I'm starting my PhD in the Bonsai team!
• Sep 2023 - Talk at WABI 2023 in Houston about fractional hitting sets
• Jun 2023 - Our paper on fractional hitting sets has been accepted to WABI 2023!
• Mar 2023 - I'm joining Camille Marchet and Antoine Limasset to work on locality-preserving representation of k-mer sets!
• Jun 2022 - I did a semester project supervised by Ola Svensson on the forest augmentation problem. [slides]
• Dec 2021 - I did a semester project with Erwan Le Merrer and Gilles Trédan on the indistinguishability of black-box recommenders outputs.
• Jul 2021 - I did my first research internship with Dominique Lavenier in the GenScale team. I've been working on a new algorithm for aligning long genomic sequences in the consensus problem. [report] • [slides]